无锡地区ST15型耐碳青霉烯类肺炎克雷伯菌耐药及毒力特征分析
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R181.3+2

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无锡市卫生健康委员会"双百"中青年医疗卫生拔尖人才基金项目(HB2023021)


Characteristics of antimicrobial resistance and virulence in ST15 carbapenem- resistant Klebsiella pneumoniae in Wuxi area
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    摘要:

    目的 分析江苏无锡地区临床分离的ST15型耐碳青霉烯类肺炎克雷伯菌(CRKP)的分子流行病学及基因组进化关系,为制定区域化精准防控策略提供科学依据。方法 收集2021年1月—2024年12月无锡市某三级甲等医院临床分离的18株非重复ST15型CRKP进行菌种鉴定及药敏试验。应用Illumina NovaSeq X Plus平台对所有菌株进行全基因组二代测序。 基于此,筛选出2株高毒力菌株,利用Oxford Nanopore PromethION 平台获得高质量完成图基因组,分析菌株的耐药基因、毒力基因、质粒携带情况及基因组结构特征,并基于单核苷酸多态性(SNP)构建系统发育树。利用大蜡螟感染模型评估所选菌株的毒力。结果 药敏试验结果显示,所有菌株对碳青霉烯类等广谱抗菌药物普遍耐药,但对替加环素及多黏菌素均敏感。18例感染患者中,年龄≥60岁者占77.8%,男性占77.8%;标本来源以呼吸道标本(占44.4%,包括痰7株、支气管肺泡灌洗液1株)及血标本(占33.3%,6株)为主,其余来源于胆汁、尿液及导管。基因组进化分析表明,菌株可分为KL19-O1和KL112-O1两个克隆群,分别携带blaKPC-2blaNDM-5blaOXA-232等碳青霉烯酶基因。其中,4株菌为高毒力合并碳青霉烯类耐药,呈现独特的rmpA2+/iutA+/rmpA-毒力基因谱;大蜡螟感染模型证实其毒力高于非高毒力菌株(P=0.015)。质粒分析显示,blaKPC-2位于IncFIIK型质粒的IS26-Tn4401b-IS26复合转座子结构内,blaOXA-232位于ColKP3型质粒,而毒力基因则由IncHI1B(pNDM-MAR)/IncFIBK37融合质粒携带。结论 无锡地区ST15 CRKP以KL19-O1-blaKPC-2克隆流行为主,但已出现携带rmpA2+/iutA+/rmpA-特征、属于KL112-O1型的高毒力亚克隆。持续监测ST15-CRKP的基因组进化对指导临床用药和制定区域化精准防控策略至关重要。

    Abstract:

    Objective To analyze the molecular epidemiology and genomic evolutionary relationship of clinically isolated ST15 carbapenem-resistant Klebsiella pneumoniae (CRKP) in Wuxi City of Jiangsu Province, and provide scientific basis for formulating regional precise prevention and control strategies. Methods Eighteen clinically isolated non-repetitive ST15-CRKP strains from a tertiary first-class hospital in Wuxi City from January 2021 to December 2024 were collected. Bacterial strains were identified and underwent antimicrobial susceptibility testing. Whole genome next-generation sequencing via Illumina NovaSeq X Plus platform was performed on all strains. Based on the results, 2 highly virulent strains were screened and analyzed by the Oxford Nanopore PromethION platform to obtain high-quality complete genome maps. Resistance genes, virulence genes, plasmid carrying status, and genomic structural characteristics of the strains were analyzed, and the phylogenetic tree was constructed based on single nucleotide polymorphisms (SNPs). Virulence of selected strains was evaluated by Galleria mellonella infection model. Results Antimicrobial susceptibility testing results showed that all strains were generally resistant to broad-spectrum antimicrobial agents such as carbapenems, but sensitive to tigecycline and polymyxin. Among the 18 infected patients, 77.8% were aged≥60 years old, and 77.8% were male. The major specimens were respiratory specimens (accounting for 44.4%, including 7 sputum specimens and 1 bronchoalveolar lavage fluid) and blood specimens (33.3%, n=6), the rest were from bile, urine, and ducts. Genomic evolutionary analysis showed that the strains could be divided into two clone groups, KL19-O1 and KL112-O1, carrying carbapenemase genes such as blaKPC-2, blaNDM-5, and blaOXA-232. Among them, 4 strains were hypervirulent and resistant to carba-penems, exhibiting a unique rmpA2+/iutA+/rmpA- virulence gene profile. Galleria mellonella infection model confirmed that the virulence was higher than non-hypervirulent strains (P=0.015). Plasmid analysis showed that blaKPC-2 was located within the IS26-Tn4401b-IS26 complex transposon structure of the IncFIIK type plasmid, blaOXA-232 was located in the ColKP3 type plasmid, and the virulence gene was carried by the IncHI1B (pNDM MAR)/IncFIBK37 fusion plasmid. Conclusion ST15-CRKP in Wuxi area is dominated by KL19-O1-blaKPC-2 clone epidemic, but hypervirulent subclones carrying rmpA2+/iutA+/rmpA- and belonging to KL112-01 have emerged. Continuous monitoring on the genomic evolution of ST15-CRKP is crucial for guiding clinical medication as well as developing regional precision prevention and control strategies.

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万林,刘雨彤,李雄,等.无锡地区ST15型耐碳青霉烯类肺炎克雷伯菌耐药及毒力特征分析[J]. 中国感染控制杂志,2026,25(3):325-334. DOI:10.12138/j. issn.1671-9638.20262921.
WAN Lin, LIU Yutong, LI Xiong, et al. Characteristics of antimicrobial resistance and virulence in ST15 carbapenem- resistant Klebsiella pneumoniae in Wuxi area[J]. Chin J Infect Control, 2026,25(3):325-334. DOI:10.12138/j. issn.1671-9638.20262921.

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  • 收稿日期:2025-08-29
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  • 在线发布日期: 2026-03-27
  • 出版日期: 2026-03-28